{"id":516,"date":"2022-10-12T16:44:24","date_gmt":"2022-10-12T07:44:24","guid":{"rendered":"https:\/\/onuma-endosymbiosis.com\/?page_id=516"},"modified":"2024-06-25T16:37:43","modified_gmt":"2024-06-25T07:37:43","slug":"publication","status":"publish","type":"page","link":"https:\/\/onuma-endosymbiosis.com\/en\/publication\/","title":{"rendered":"Publication"},"content":{"rendered":"\n<p><strong>\u2020; corresponding author, *; co-first author<\/strong><\/p>\n\n\n\n<p>2023<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Maruyama M, Kagamoto T, Matsumoto Y, <strong><span style=\"text-decoration: underline;\">Onuma R<\/span><\/strong>, Miyagishima S, Tanifuji T, Nakazawa M, Kashiyama Y*. (2023) Horizontally acquired nitrate reductase realized kleptoplastic photoautotrophy of&nbsp;<em>Rapaza viridis<\/em>. <strong><em>Plant And Cell Physiology<\/em><\/strong> 64: 1082\u20131090.<\/li>\n<\/ul>\n\n\n\n<p>2022<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Kamikawa R, Mochizuki T, Sakamoto M, Tanizawa Y, Nakayama T, <strong><span style=\"text-decoration: underline;\">Onuma R<\/span><\/strong>, Cenci U, Moog D, Speak S, Sarkozi K, Toseland A, Oosterhout C, Oyama K, Kato M, Kume K, Kayama M, Azuma T, Ishii K, Miyashita H, Henrissat B, Lombard V, Win J, Kamoun S, Kashiyama Y, Mayama S, Miyagishima S, Tanifuji G, Mock T, Nakamura Y. (2022) Genome evolution of a nonparasitic secondary heterotroph, the diatom <em>Nitzschia putrida<\/em>. <strong><em>Science Advances<\/em><\/strong> 8: eabi5075<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Hirooka S, Itabashi T, Ichinose TM, <strong><span style=\"text-decoration: underline;\">Onuma R<\/span><\/strong>, Fujiwara T, Yamashita S, Jong LW, Tomita R, Iwane AH. Miyagishima S. (2022) Life cycle and functional genomics of the unicellular red alga <em>Galdieria<\/em> for elucidating algal and plant evolution and industrial use. <strong><em>Proceedings of the National Academy of Sciences<\/em><\/strong> 119:e2210665119<\/li>\n<\/ul>\n\n\n\n<div style=\"height:45px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<hr class=\"wp-block-separator has-css-opacity is-style-wide\"\/>\n\n\n\n<p>Papers before 2020 ( papers when Onuma was student or post-doctoral fellow)<\/p>\n\n\n\n<p>2020<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Yamada N, Sakai H, <strong>Onuma R<\/strong>, Kroth PG, Horiguchi T. (accepted). Five non-motile dinotom dinoflagellates of the genus <em>Dinothrix<\/em>. <em><strong><em>Frontiers in Plant Science<\/em><\/strong><\/em>11: 1764.<\/li>\n\n\n\n<li>Fujiwara T, Hirooka S, Ohbayashi R, <strong>Onuma R<\/strong>, Miyagishima S. (2020). Relationship between cell cycle and diel transcriptomic changes in metabolism in a unicellular red alga. <em><strong>Plant Physiology<\/strong><\/em> 183: 1484\u20131501.<\/li>\n\n\n\n<li><strong>Onuma R<\/strong>\u2020, Hirooka S, Kanesaki Y, Fujiwara T, Yoshikawa H, Miyagishima S\u2020 (2020). Changes in the transcriptome, ploidy, and optimal light intensity of a cryptomonad upon integration into a kleptoplastic dinoflagellate. <em><strong>The ISME Journal<\/strong><\/em> 14: 2407\u20132423.<\/li>\n\n\n\n<li>Ohbayashi R, Hirooka S, <strong>Onuma R<\/strong>, Kanesaki Y, Hirose Y, Kobayashi Y, Fujiwara T, Furusawa T, Miyagishima, S. (2020). Evolutionary changes in DnaA-dependent chromosomal replication in cyanobacteria. <em><strong>Frontiers in microbiology<\/strong><\/em> 11: 786.<\/li>\n\n\n\n<li>Harada R, Hirakawa Y, Yabuki A, Kashiyama Y, Maruyama M, <strong>Onuma R<\/strong>, Soukal P, Miyagishima S, Hampl V, Tanifuji G, Inagaki, Y. (2020). Inventory and evolution of mitochondrion-localized family A DNA polymerases in euglenozoa. <em><strong>Pathogens<\/strong><\/em> 9: 257.<\/li>\n<\/ul>\n\n\n\n<p>2019<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Uzuka A*, Kobayashi Y*, <strong>Onuma R*<\/strong>, Hirooka S, Kanesaki Y, Yoshikawa H, Fujiwara T, Miyagishima S\u2020. (2019) Responses of unicellular predators to cope with the phototoxicity of photosynthetic prey. <strong><em>Nature Communication<\/em>s <\/strong>10: 5606.<\/li>\n\n\n\n<li>Yamada N, Bolton JJ, Trobajo R, Mann DG, D\u0105bek P, Witkowski A, <strong>Onuma R<\/strong>, Horiguchi T, Kroth PG. (2019). Discovery of a kleptoplastic \u2018dinotom\u2019dinoflagellate and the unique nuclear dynamics of converting kleptoplastids to permanent plastids. <em><strong>Scientific Reports<\/strong><\/em> 9: 1-13.<\/li>\n<\/ul>\n\n\n\n<p>2018<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Yokouchi K, <strong>Onuma R<\/strong>, Horiguchi T. (2018). Ultrastructure and phylogeny of a new species of mixotrophic dinoflagellate, <em>Paragymnodinium stigmaticum<\/em> sp. nov.(Gymnodiniales, Dinophyceae). <em><strong>Phycologia<\/strong><\/em> 57: 539-554.<\/li>\n<\/ul>\n\n\n\n<p>2017<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Hirooka S, Hirose Y, Kanesaki Y, Higuchi S, Fujiwara T, <strong>Onuma R<\/strong>, Era A, Ohbayashi R, Uzuka A, Nozaki H, Yoshikawa H, Miyagishima S. (2017). Acidophilic green algal genome provides insights into adaptation to an acidic environment. <em>Proc. Natl. Acad. Sci. U.S.A.<\/em>, <strong>114<\/strong>: E8304-E8313.<\/li>\n\n\n\n<li><strong>Onuma R<\/strong>\u2020, Neha M, Miyagishima S\u2020. (2017) Regulation of chloroplast and nucleomorph replication by the cell cycle in the cryptophyte <em>Guillardia theta<\/em>. <em><strong>Scientific Reports<\/strong><\/em> 7: 2345.<\/li>\n<\/ul>\n\n\n\n<p>2016<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Onuma R<\/strong>\u2020, Horiguchi T (2016) Specificity of <em>Chroomonas<\/em> (Cryptophyceae) as a sourceof kleptochloroplast for <em>Nusuttodinium aeruginosum<\/em> (Dinophyceae). <em><strong>Phycological Research<\/strong><\/em> 64: 35-43.<\/li>\n\n\n\n<li>Hagino K, Tomioka N, Young JR, Takano Y, <strong>Onuma R<\/strong>, Horiguchi T. (2016). Extracellular calcification of <em>Braarudosphaera bigelowii<\/em> deduced from electron microscopic observations of cell surface structure and elemental composition of pentaliths. <em><strong>Mar. Micropaleontol.<\/strong><\/em> 125: 85-94.<\/li>\n<\/ul>\n\n\n\n<p>2015<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Onuma R<\/strong>, Watanabe K, Horiguchi T (2015) <em>Pellucidodinium psammophilum<\/em> gen. &amp; sp. nov. and <em>Nusuttodinium desymbiontum<\/em> sp. nov. (Dinophyceae), two novel heterotrophs closely related to kleptochloroplastidic dinoflagellates. <em><strong>Phycologia<\/strong><\/em> 54: 192-209.<\/li>\n\n\n\n<li><strong>Onuma R<\/strong>, Horiguchi T (2015) Kleptochloroplast enlargement, karyoklepty and the distribution of the cryptomonad nucleus in <em>Nusuttodinium<\/em> (= <em>Gymnodinium<\/em>) <em>aeruginosum<\/em> (Dinophyceae). <em><strong>Protist<\/strong><\/em> 166: 177-195.<\/li>\n\n\n\n<li>G\u00f3mez F, <strong>Onuma R<\/strong>, Artigas LF, Horiguchi T. (2015). A new definition of <em>Adenoides eludens<\/em>, an unusual marine sand-dwelling dinoflagellate without cingulum, and <em>Pseudadenoides kofoidii<\/em> gen. &amp; comb. nov. for the species formerly known as <em>Adenoides eludens<\/em>. <em><strong>European Journal of Phycology<\/strong><\/em> 50: 125-138.<\/li>\n<\/ul>\n\n\n\n<p>2014<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Watanabe K, Miyoshi Y, Kubo F, <strong>Onuma R<\/strong>, Murray S, Horiguchi T. (2014). <em>Ankistrodinium armigerum<\/em> sp. nov.(Dinophyceae), a new species of heterotrophic marine sand\u2010dwelling dinoflagellate from Japan and Australia. <strong><em>Phycological research<\/em> <\/strong>62: 125-135.<\/li>\n<\/ul>\n\n\n\n<p>2013<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Onuma R<\/strong>, Horiguchi T. (2013) Morphological transition in kleptochloroplasts after ingestion in the dinoflagellates <em>Amphidinium poecilochroum<\/em> and <em>Gymnodinium aeruginosum<\/em> (Dinophyceae). <em><strong>Protist<\/strong> <\/em>164: 622\u2013642.<\/li>\n\n\n\n<li>Hagino K, <strong>Onuma R<\/strong>, Kawachi M, Horiguchi T. (2013). Discovery of an endosymbiotic nitrogen-fixing cyanobacterium UCYN-A in <em>Braarudosphaera bigelowii<\/em> (Prymnesiophyceae). <em><strong>PloS one<\/strong><\/em> 8: e81749.<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>\u2020; corresponding author, *; co-first author 2023 2022 Papers before 2020 ( papers when Onuma was student or post-doctoral fellow) 2020 2019 2018 2017 2016 2015 2014 2013<\/p>\n<p class=\"continue-reading-button\"> <a class=\"continue-reading-link\" href=\"https:\/\/onuma-endosymbiosis.com\/en\/publication\/\">Continue reading<i class=\"crycon-right-dir\"><\/i><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_locale":"en_US","_original_post":"http:\/\/onuma-endosymbiosis.com\/?page_id=2","footnotes":""},"class_list":["post-516","page","type-page","status-publish","hentry","en-US"],"_links":{"self":[{"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/pages\/516","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/comments?post=516"}],"version-history":[{"count":3,"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/pages\/516\/revisions"}],"predecessor-version":[{"id":608,"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/pages\/516\/revisions\/608"}],"wp:attachment":[{"href":"https:\/\/onuma-endosymbiosis.com\/wp-json\/wp\/v2\/media?parent=516"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}